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Publications de l'équipe

Publié le 22 janvier 2019



2019


Rabilloud T
The cydex blue assay: A one-step protein assay for samples prior to SDS electrophoresis.
Methods in Molecular Biology, 2019, 1855: 73-80

2018


Candeias SM, Kabacik S, Olsen AK, Eide DM, Brede DA, Bouffler S and Badie C
Ionizing radiation does not impair the mechanisms controlling genetic stability during T cell receptor gene rearrangement in mice
International Journal of Radiation Biology, 2018, 94(4): 357-365

Césaire M, Thariat J, Candéias SM, Stefan D, Saintigny Y and Chevalier F
Combining PARP inhibition, radiation, and immunotherapy: A possible strategy to improve the treatment of cancer?
International Journal of Molecular Sciences, 2018, 19(12): Article number 3793

Cruz-Garcia L, O'Brien G, Donovan E, Gothard L, Boyle S, Laval A, Testard I, Ponge L, Wozniak G, Miszczyk L, Candeias SM, Ainsbury E, Widlak P, Somaiah N and Badie C
Influence of confounding factors on radiation dose estimation using in vivo validated transcriptional biomarkers.
Health Physics, 2018, 115(1): 90-101

Eymard-Vernain E, Coute Y, Adrait A, Rabilloud T, Sarret G and Lelong C
The poly-gamma-glutamate of Bacillus subtilis interacts specifically with silver nanoparticles.
PLoS One, 2018, 13(5): Article number e0197501

Eymard-Vernain E, Lelong C, Pradas Del Real AE, Soulas R, Bureau S, Tardillo Suarez V, Gallet B, Proux O, Castillo-Michel H and Sarret G
Impact of a model soil microorganism and of its secretome on the fate of silver nanoparticles.
Environmental Science & Technology, 2018, 52(1): 71-78

Eymard-Vernain E, Luche S, Rabilloud T and Lelong C
Impact of nanoparticles on the Bacillus subtilis (3610) competence.
Scientific Reports, 2018, 8(1): Article number 2978
Correction.

Lumniczky K, Candéias SM, Gaipl US and Frey B
Editorial: Radiation and the immune system: Current knowledge and future perspectives.
Frontiers in Immunology, 2018, 8: 1933

Muller L, Fornecker L, Chion M, Van Dorsselaer A, Cianférani S, Rabilloud T and Carapito C
Extended investigation of tube-gel sample preparation: A versatile and simple choice for high throughput quantitative proteomics.
Scientific Reports, 2018, 8(1) Article number 8260


Prudent R, Demoncheaux N, Diemer H, Collin-Faure V, Kapur R, Paublant F, Lafanechère L, Cianférani S and Rabilloud T
A quantitative proteomic analysis of cofilin phosphorylation in myeloid cells and its modulation using the LIM kinase inhibitor Pyr1.
PLoS One, 2018, 13(12): Article number e0208979

Rabilloud T
Optimization of the cydex blue assay: A one-step colorimetric protein assay using cyclodextrins and compatible with detergents and reducers.
PLoS One, 2018, 13(4): Article number e0195755


2017


Bottero JY, Rose J, De Garidel C, Masion A, Deutsch T, Brochard G, Carrière M, Gontard N, Wortham H, Rabilloud T, Salles B, Dubosson M, Cathala B, Boutry D, Ereskovsky A, Auplat C, Charlet L, Heulin T, Frejafon E and Lanone S
SERENADE: Safer and ecodesign research and education applied to nanomaterial development, the new generation of materials safer by design.
Environmental Science: Nano, 2017, 4(3): 526-538

Candéias SM, Mika J, Finnon P, Verbiest T, Finnon R, Brown N, Bouffler S, Polanska J and Badie C
Low-dose radiation accelerates aging of the T-cell receptor repertoire in CBA/Ca mice.
Cellular and Molecular Life Sciences, 2017, 74(23): 4339-4351

Carapito C, Kuhn L, Karim L, Rompais M, Rabilloud T, Schwenzer H and Sissler M
Two proteomic methodologies for defining N-termini of mature human mitochondrial aminoacyl-tRNA synthetases.
Methods, 2017, 113: 111-119

Dalzon B, Aude-Garcia C, Collin-Faure V, Diemer H, Beal D, Dussert F, Fenel D, Schoehn G, Cianferani S, Carrière M and Rabilloud T
Differential proteomics highlights macrophage-specific responses to amorphous silica nanoparticles.
Nanoscale, 2017, 9(27): 9641-9658


2016


Armand L, Biola-Clier M, Bobyk L, Collin-Faure V, Diemer H, Strub JM, Cianferani S, Van Dorsselaer A, Herlin-Boime N, Rabilloud T and Carriere M
Molecular responses of alveolar epithelial A549 cells to chronic exposure to titanium dioxide nanoparticles: A proteomic view.
Journal of Proteomics, 2016, 134: 163-173

Aude-Garcia C, Dalzon B, Ravanat JL, Collin-Faure V, Diemer H, Strub JM, Cianferani S, Van Dorsselaer A, Carrière M and Rabilloud T
A combined proteomic and targeted analysis unravels new toxic mechanisms for zinc oxide nanoparticles in macrophages.
Journal of Proteomics, 2016, 134: 174–185

Aude-Garcia C, Villiers F, Collin-Faure V, Pernet-Gallay K, Jouneau PH, Sorieul S, Mure G, Gerdil A, Herlin-Boime N, Carrière M and Rabilloud T
Different in vitro exposure regimens of murine primary macrophages to silver nanoparticles induce different fates of nanoparticles and different toxicological and functional consequences.
Nanotoxicology, 2016, 10(5):586-596

Candéias SM and Gaipl US
The immune system in cancer prevention, development and therapy.
Anti-Cancer Agents in Medicinal Chemistry, 2016, 16(1): 101-107

Dalzon B, Diemer H, Collin-Faure V, Cianferani S, Rabilloud T and Aude-Garcia C
Culture medium-associated changes in the core proteome of macrophages and in their responses to copper oxide nanoparticles.
Proteomics, 2016, 16(22): 2864-2877

Durantel F, Balanzat E, Cassimi A, Chevalier F, Ngono-Ravache Y, Madi T, Poully JC, Ramillon JM, Rothard H, Ropars F, Schwob L, Testard I and Saintigny Y
Dosimetry for radiobiology experiments at GANIL.
Nuclear Instruments and Methods in Physics Research Section A: Accelerators, Spectrometers, Detectors and Associated Equipment, 2016, 816: 70-77

Luche S, Eymard-Vernain E, Diemer H, Van Dorsselaer A, Rabilloud T and Lelong C
Zinc oxide induces the stringent response and major reorientations in the central metabolism of Bacillus subtilis.
Journal of Proteomics, 2016, 135: 170-180

Mavragani IV, Laskaratou DA, Frey B, Candéias SM, Gaipl US, Lumniczky K and Georgakilas AG
Key mechanisms involved in ionizing radiation-induced systemic effects. A current review.
Toxicology Research, 2016, 5(1): 12-33

Rabilloud T
A single step protein assay that is both detergent and reducer compatible: The cydex blue assay.
Electrophoresis, 2016, 37(20): 2595-2601

Shim G, Normil MD, Testard I, Hempel WM, Ricoul M and Sabatier L
Comparison of individual radiosensitivity to gamma-rays and carbon ions.
Frontiers in Oncology, 2016, 6: 137

Vaca Jacome AS, Rabilloud T, Schaeffer-Reiss C, Rompais M, Ayoub D, Lane L, Bairoch A, Van Dorsselaer A and Carapito C
N-terminome analysis of the human mitochondrial proteome.
Proteomics, 2016, 15(14): 2519-2524


2015

Candéias SM and Testard I
The many interactions between the innate immune system and the response to radiation.
Cancer Letters, 2015, 368(2):173-8

Dorier M, Brun E, Veronesi G, Barreau F, Pernet-Gallay K, Desvergne C, Rabilloud T, Carapito C, Herlin-Boime N and Carrière M
Impact of anatase and rutile titanium dioxide nanoparticles on uptake carriers and efflux pumps in Caco-2 gut epithelial cells.
Nanoscale, 2015, 7(16): 7352-7560

Gentil Dit Maurin A, Lemercier C, Collin-Faure V, Marche PN, Jouvin-Marche E and Candeias SM
Developmental regulation of p53-dependent radiation-induced thymocyte apoptosis in mice.
Clinical and Experimental Immunology, 2015, 179(1): 30-38

Jacome ASV, Rabilloud T, Schaeffer-Reiss C, Rompais M, Ayoub D, Lane L, Bairoch A, Van Dorsselaer A and Carapito C
N-terminome analysis of the human mitochondrial proteome.
Proteomics, 2015, 15(14): 2519-2524

Lelong C and Rabilloud T
Preparing protein extracts for quantitative two-dimensional gel comparison.
Current Protocols in Protein Sciences, 2015, 80: 22.4.1-22.4.12

Rabilloud T and Lescuyer P
Proteomics in mechanistic toxicology: History, concepts, achievements, caveats, and potential.
Proteomics, 2015, 15(5-6): 1051-1074

Triboulet S, Aude-Garcia C, Armand L, Collin-Faure V, Chevallet M, Diemer H, Gerdil A, Proamer F, Strub JM, Habert A, Herlin N, Van Dorsselaer A, Carrière M and Rabilloud T
Comparative proteomic analysis of the molecular responses of mouse macrophages to titanium dioxide and copper oxide nanoparticles unravels some toxic mechanisms for copper oxide nanoparticles in macrophages.
PLoS One, 2015, 10(4): e0124496

Vaca Jacome AS, Rabilloud T, Schaeffer-Reiss C, Rompais M, Ayoub D, Lane L, Bairoch A, Van Dorsselaer A and Carapito C
N-terminome analysis of the human mitochondrial proteome.
Proteomics, 2015, 15(14): 2519-2524

Veronesi G, Aude-Garcia C, Kieffer I, Gallon T, Delangle P, Herlin-Boime N, Rabilloud T and Carrière M
Exposure-dependent Ag+ release from silver nanoparticles and its complexation in AgS2 sites in primary murine macrophages.
Nanoscale, 2015, 7(16): 7323-7330

Viau M, Testard I, Shim G, Morat L, Normil MD, Hempel WM and Sabatier L
Global quantification of γH2AX as a triage tool for the rapid estimation of received dose in the event of accidental radiation exposure.
Mutation Research/Genetic Toxicology and Environmental Mutagenesis, 2015, 793: 123-131


2014

Brun E, Barreau F, Veronesi G, Fayard B, Sorieul S, Chaneac C, Carapito C, Rabilloud T, Mabondzo A, Herlin-Boime N and Carriere M
Titanium dioxide nanoparticle impact and translocation through ex vivo, in vivo and in vitro gut epithelia.
Particle and Fibre Toxicology, 2014, 11: 13

Chevallet M, Jarvis L, Harel H, Luche S, Degot S, Chapuis V, Boulay G, Rabilloud T and Bouron A
Functional consequences of the over-expression of TRPC6 channels in HEK cells. Impact on the homeostasis of zinc.
Metallomics, 6: 1269-1276


Rabilloud T
How to use 2D gel electrophoresis in plant proteomics.
Methods of Molecular Biology, 2014, 1072: 43-50

Rabilloud T
Paleoproteomics explained to youngsters: How did the wedding of two-dimensional electrophoresis and protein sequencing spark proteomics on: Let there be light.
Journal of Proteomics, 2014, 107: 5-12

Rabilloud T and Lescuyer P
The proteomic to biology inference, a frequently overlooked concern in the interpretation of proteomic data: A plea for functional validation.
Proteomics, 2014, 14(2-3): 157-161

Triboulet S, Aude-Garcia C, Armand L, Gerdil A, Diemer H, Proamer F, Collin-Faure V, Habert A, Strub JM, Hanau D, Herlin N, Carriere M, Van Dorsselaer A and Rabilloud T
Analysis of cellular responses of macrophages to zinc ions and zinc oxide nanoparticles: A combined targeted and proteomic approach.
Nanoscale, 2014, 6(11): 6102-6114


2013


Armand L, Biola-Clier M, Rabilloud T and Carrière M
TiO
2 nanoparticles: A hidden enemy?
Biofutur, 2013, 347: 42-45

Boudil A, Skhiri L, Candeias S, Pasqualetto V, Legrand A, Bedora-Faure M, Gautreau-Rolland L, Rocha B and Ezine S
Single-cell analysis of thymocyte differentiation: identification of transcription factor interactions and a major stochastic component in alphabeta-lineage commitment.
PLoS One, 2013, 8(10): e73098

Mayr M and Rabilloud T
Multidimensional separation prior to mass spectrometry: Getting closer to the bottom of the iceberg.
Proteomics, 2013, 13(20): 2942-2943

Triboulet S, Aude-Garcia C, Carriere M, Diemer H, Proamer F, Habert A, Chevallet M, Collin-Faure V, Strub JM, Hanau D, Van Dorsselaer A, Herlin-Boime N and Rabilloud T
Molecular responses of mouse macrophages to copper and copper oxide nanoparticles inferred from proteomic analyses.
Molecular and Cellular Proteomics, 2013, 12(11): 3108-3122

Rabilloud T
When 2D is not enough, go for an extra dimension.
Proteomics, 2013, 13(14): 2065-2068

Rabilloud T and Triboulet S
Two-dimensional SDS-PAGE fractionation of biological samples for biomarker discovery.
Methods in Molecular Biology, 2013, 1002: 151-65


2012

Lelong C, Chevallet M, Diemer H, Luche S, Van Dorsselaer A and Rabilloud T
Improved proteomic analysis of nuclear proteins, as exemplified by the comparison of two myeloid cell lines nuclear proteomes.
Journal of Proteomics, 2012, 77: 577-602

Patramool S, Choumet V, Surasombatpattana P, Sabatier L, Thomas F, Thongrungkiat S, Rabilloud T, Boulanger N, Biron DG and Missé D
Update on the proteomics of major arthropod vectors of human and animal pathogens.
Proteomics, 2012, 12(23-24): 3510-3523

Rabilloud T
The whereabouts of 2D gels in quantitative proteomics.
Methods in Molecular Biology, 2012, 893: 25-35

Rabilloud T
Silver staining of 2D electrophoresis gels.
Methods in Molecular Biology, 2012, 893: 61-73


2011

Aude-Garcia C, Collin-Faure V, Luche S and Rabilloud T
Improvements and simplifications in in-gel fluorescent detection of proteins using ruthenium II tris-(bathophenanthroline disulfonate): The poor man's fluorescent detection method.
Proteomics, 2011, 11(2): 324-328

Aude-Garcia C, Villiers C, Candeias SM, Garrel C, Bertrand C, Collin V, Marche PN and Jouvin-Marche E
Enhanced susceptibility of T lymphocytes to oxidative stress in the absence of the cellular prion protein.
Cellular and Molecular Life Sciences, 2011, 68(4): 687-696

Nzengue Y, Candéias SM, Sauvaigo S, Douki T, Favier A, Rachidi W and Guiraud P
The toxicity redox mechanisms of cadmium alone or together with copper and zinc homeostasis alteration: Its redox biomarkers.
Journal of Trace Elements in Medicine and Biology, 2011, 25(3): 171-180

Petit AN, Aude Garcia C, Candéias S, Casanova A, Catty P, Charbonnier P, Chevallet M, Collin-Faure V, Cuillel M, Douki T, Herlin-Boime N, Lelong C, Luche S, Mintz E, Moulis JM, Nivière V, Ollagnier de Choudens S, Rabilloud T, Ravanat J, Sauvaigo S, Carrière M and Michaud-Soret I
Interference between nanoparticles and metal homeostasis.
Journal of Physics: Conference Series, 2011, 304: 012035

Rabilloud T and Lelong C
Two-dimensional gel electrophoresis in proteomics: A tutorial.
Journal of Proteomics, 2011, 74(10): 1829-1841


2010

Rabilloud T
Variations on a theme: Changes to electrophoretic separations that can make a difference.
Journal of Proteomics, 2010, 73(8): 1562-1572

Rabilloud T, Chevallet M, Luche S and Lelong C
Two-dimensional gel electrophoresis in proteomics: Past, present and future.
Journal of Proteomics, 2010, 73(11): 2064-2077

Rabilloud T, Hochstrasser D and Simpson RJ
Is a gene-centric human proteome project the best way for proteomics to serve biology?
Proteomics, 2010, 10(17): 3067-3072


2009

Lelong C, Chevallet M, Luche S and Rabilloud T
Silver staining of proteins in 2DE gels.
Methods in Molecular Biology, 2009, 519: 339-350

Rabilloud T
Solubilization of proteins in 2DE: An outline.
Methods in Molecular Biology, 2009, 519: 19-30

Rabilloud T
Detergents and chaotropes for protein solubilization before two-dimensional electrophoresis.
Methods in Molecular Biology, 2009, 528: 259-267

Rabilloud T
Membrane proteins and proteomics: Love is possible, but so difficult.
Electrophoresis, 2009, 30 Suppl 1: S174-180

Rabilloud T, Vaezzadeh AR, Potier N, Lelong C, Leize-Wagner E and Chevallet M
Power and limitations of electrophoretic separations in proteomics strategies.
Mass Spectrometry Reviews, 2009, 28(5): 816-843

Villiers C, Chevallet M, Diemer H, Couderc R, Freitas H, Van Dorsselaer A, Marche PN and Rabilloud T
From secretome analysis to immunology: Chitosan induces major alterations in the activation of dendritic cells via a TLR4-dependent mechanism.
Molecular and Cellular Proteomics, 2009, 8(6): 1252-1264


2008

Chevallet M, Luche S, Diemer H, Strub JM, Van Dorsselaer A and Rabilloud T
Sweet silver: A formaldehyde-free silver staining using aldoses as developing agents, with enhanced compatibility with mass spectrometry.
Proteomics, 2008, 8(23-24): 4853-4861

Dunn MJ, Gil C, Kleinhammer C, Lottspeich F, Pennington S, Sanchez JC, Albar JP, Bini L, Corrales F, Corthals GL, Fountoulakis MM, Hoogland C, James P, Jensen ON, Jimenez C, Jorrin-Novo J, Kraus HJ, Meyer H, Noukakis D, Palagi PM, Penque D, Quinn A and Rabilloud T
EuPA achieves visibility - an activity report on the first three years.
Journal of Proteomics, 2008, 71(1): 11-18

Gibson F, Anderson L, Babnigg G, Baker M, Berth M, Binz PA, Borthwick A, Cash P, Day BW, Friedman DB, Garland D, Gutstein HB, Hoogland C, Jones NA, Khan A, Klose J, Lamond AI, Lemkin PF, Lilley KS, Minden J, Morris NJ, Paton NW, Pisano MR, Prime JE, Rabilloud T, Stead DA, Taylor CF, Voshol H, Wipat A and Jones AR
Guidelines for reporting the use of gel electrophoresis in proteomics.
Nature Biotechnology, 2008, 26(8): 863-864

Rabilloud T
Mitochondrial proteomics: Analysis of a whole mitochondrial extract with two-dimensional electrophoresis.
Methods in Molecular Biology, 2008, 432: 83-100

Rabilloud T, Chevallet M, Luche S and Lelong C
Fully denaturing two-dimensional electrophoresis of membrane proteins: A critical update.
Proteomics, 2008, 8(19): 3965-3973

Rousselet E, Martelli A, Chevallet M, Diemer H, Van Dorsselaer A, Rabilloud T and Moulis JM
Zinc adaptation and resistance to cadmium toxicity in mammalian cells: Molecular insight by proteomic analysis.
Proteomics, 2008, 8(11): 2244-2255